miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|84007892|gb|DW145162.1|DW145162 TTTGTTACGCTGCCTCATTTTACAAAGATGTAGCCAAGAGATGCCAGGAAAACCCTGGAAGGAGTATAGAGACTGTGTTT
GACTTGGTGGAAATGGAGGACGATGAGAGAAGGGAGCTGTTACAGATGTCGGATCCTCAGCTCATGGATATCGCAAAGTT
TTGCAACCGGTTCCCTAATATCGATTTGTCGTATGATGTGGTGGATGGTGACAACATTAGGGCTGGAGAGGAGTTTACTA
TGGTGGTGACTCTTGAAAGGGATTTAGAGGGTAGGACTGAGGTGGGACCGGTGGATGCCCCGAGGTATCCAAAAGGTAAA
GAGGAAGGTTGGTGGTTGGTGGTTGGTGACACAAAGAGCAACCAGTTGCTTGCAATCAAGAGGGTTTCGTTGCAGAGGAA
GGCCAAGGTGAAGCTTGATAACATCACTGCTCCAAGTGATGCAGTTGGGAAGAAAAGCTTTACTCTGTATTTCATGTGCG
ACTCTTACATGGGATGCGACCAGGAGTATACTTTCTCTGTTGATGTGAAAGCAGGAACAGCGGAAGAGAATGATATGACA
TGATTTAGCAGTCAGGTCTTAGGGGTTCTCTGGTCTCTTGAAAGTCTACTGGTGAAATGGTATTATAGGAGTGGGAGTGG
GAGTGGGAGGGTGAAGGATTCTGATTCTTGTATCTTACTTACACTTGGGCGTCAGGAGGTTCTACTGATAATGTAGTTAG
TTGATAGTTGTATTGACTGCTGAGACTAGCTTAGTAACTGTCTTGTCATCTTTTTGTTGCTTCTTTAAAGCATAAAACAT
ATTTATGGTGTAGGAATGAAATGTTAT




Most similar to sp|O75643|U520_HUMAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa
            helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2
          Length = 2136

 Score =  196 bits (499), Expect = 1e-49
 Identities = 98/180 (54%), Positives = 136/180 (75%), Gaps = 1/180 (0%)
 Frame = +3

Query: 18   FYKDVAKRCQENPGRSIETVFDLVEMEDDERRELLQMSDPQLMDIAKFCNRFPNIDLSYD 197
            F  +  KRC +   + +E+VFD++EMED+ER  LLQ++D Q+ D+A+FCNR+PNI+LSY+
Sbjct: 1966 FTSEHIKRCTD---KGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYE 2022

Query: 198  VVDGDNIRAGEEFTMVVTLERDLEGRTEVGPVDAPRYPKGKEEGWWLVVGDTKSNQLLAI 377
            VVD D+IR+G    ++V LER+ E     GPV AP +P+ +EEGWW+V+GD KSN L++I
Sbjct: 2023 VVDKDSIRSGGPVVVLVQLEREEE---VTGPVIAPLFPQKREEGWWVVIGDAKSNSLISI 2079

Query: 378  KRVSLQRKAKVKLDNITAPSDAVGKKSFTLYFMCDSYMGCDQEYTFSVDVK-AGTAEEND 554
            KR++LQ+KAKVKLD +   + A G  ++TLYFM D+YMGCDQEY FSVDVK A T  ++D
Sbjct: 2080 KRLTLQQKAKVKLDFV---APATGAHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD 2136